JJM Assessment Documents

SPRFMO

South Pacific Regional Fisheries Management Organisation

Jack Mackerel Working Group

JJM Assessment Documents

Overview

This site collects the main Quarto documents in the doc/ directory and renders them for direct browsing through GitHub Pages.

Notices

• Benchmark workshop information posted: Benchmark Workshop Information (QMD)
• Visitor Information posted: SPRFMO Jack Mackerel MSE Workshop Visitor Information (QMD)

SCW16 preparations

• JMWG 2026 Plan (DOCX, QMD)

• SCW16/ToR (PDF, DOCX)

Draft SCW16 papers

• SCW16/Paper-00: Preliminary agenda (PDF, DOCX, QMD)

• SCW16/Paper-01 (PDF, DOCX)

• SCW16/Paper-03: Meta-Analysis of CPUE Papers on Jack Mackerel (2022-2025) (QMD)

Prep meeting report

JMWG Meeting report 01-2026 (PDF, DOCX)

Other background reports

• SC13 Assessment Update
• Helper Scripts Guide
• User Guide
• Tutorial Guide
• Archive

Document Guide

SCW16/ToR

These are the benchmark workshop terms of reference, tracked as JMWG_Benchmark_ToR.qmd, with published HTML, PDF, and DOCX outputs.

SCW16/Paper-01

This is the main benchmark working paper, tracked as SCW16-Paper-01.qmd, with published HTML, PDF, and DOCX outputs.

SCW16/Paper-00

This is the preliminary agenda note for the IMARPE-IFOP online acoustic session, tracked as SCW16-Paper-00.qmd, with HTML, PDF, and DOCX outputs.

JMWG Meeting report 01-2026

These meeting notes are currently published from JMWG-Meeting report-01-2026.qmd as HTML, PDF, and DOCX outputs.

SCW16/Paper-03: Meta-Analysis of CPUE Papers on Jack Mackerel (2022-2025)

This document compiles CPUE-related SPRFMO meeting papers from SC10 through SC13 into a single review document.

SC13 Assessment Update

This is the converted Quarto version of the incremental SC13 assessment update document originally maintained as assessment/R/SC13.rmd.

Helper Scripts Guide

This guide documents the reusable helper scripts added for:

• creating the reduced 2.00 data file
• creating the matching h1_2.00 control file
• running standard JJM fits
• running short adnuts MCMC benchmarks

User Guide

This is the Quarto version of the JJM user guide converted from doc/userguide/main.tex.

Tutorial Guide

This is the workshop tutorial book published from doc/tutorial/.

Archive

This section collects the legacy annual and validation RMarkdown assessment reports moved from assessment/R/ and published under archive/.

Notes

The website is rendered from the doc/ directory into the repository docs/ folder so it can be served by GitHub Pages in the standard way. The underlying model code, inputs, and results remain in assessment/.